Cloning and bioinformatics analysis of cadmium-resistant gene TASFT2 in wheat

Keywords: cadmium, wheat, tolerance, Cd-resistance, gene sequence analysis.

Abstract

Cadmium is a non-essential trace element which is highly toxic to plants. Because of its high mobility and toxicity, it has become a hot topic to study the molecular mechanism of cadmium uptake and transport by plants and to cultivate new crop varieties resistant to cadmium and low cadmium accumulation. Cd enters into the plant body, it will be absorbed by the root system and gradually transported to the above-ground part. Plants reduce toxic effects by absorbing and transporting heavy metals in different chemical forms and storing them in different organs and tissues. Under cadmium stress, plants produce a variety of physiological and biochemical mechanisms that limit cadmium absorption and transfer to reduce cadmium damage. Cadmium stress induces the expression level of metallothionine gene in gramineous crops (wheat and rice), which has a positive effect on improving plant resistance to cadmium and alleviating cadmium toxicity. It is not clear how the gene causes tolerance to heavy metals. Therefore, this experiment cloned the gene and analyzed the biological information to find the mechanism of cadmium resistance.

The full length of TaSFT2 gene was cloned by RT-PCR. The sequence analysis showed that ORF gene was 684bp, encoding 228 amino acids, with a molecular weight of 58.542kD and an isoelectric point of 9.16. The results of evolutionary tree analysis showed that wheat TaSFT2 was closely related to maize ZmGot1/Sft2 gene and rice OsGot1/Sft2 protein.

The basic information of TaSFT2 gene can be obtained by chromosome location analysis, intron/exon analysis, ORF analysis and expression profile analysis, etc. By analyzing the basic properties of TaSFT2 protein, hydrophobicity analysis, transmembrane region prediction, signal peptide prediction and similarity prediction, the properties of gene-encoded protein can be preliminarily determined and predicted. In particular, hydrophobicity analysis and transmembrane region prediction can be used to predict whether the gene is membrane protein, which has important reference significance for determining the direction of experimental research.

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Published
2020-11-30
How to Cite
Wu, L., & Zhatova, H. (2020). Cloning and bioinformatics analysis of cadmium-resistant gene TASFT2 in wheat. Bulletin of Sumy National Agrarian University. The Series: Agronomy and Biology, 41(3), 63-68. https://doi.org/10.32782/agrobio.2020.3.8