ASSOCIATION OF MITOCHONDRIAL HAPLOTYPES WITH PHENOTYPIC SIGNS OF FATTENING PRODUCTIVITY IN HYBRID PIGS

Keywords: pigs, haplotype, haplogroup, mitochondrial genome, D-loop, mtDNA haplotype association, clade, cluster, PCR-RFLP analysis, zootechnical analysis, the gender difference in pigs, AGE100, ADG

Abstract

The results of the study indicate that the variability of mtDNA of pigs is one of the ways to assess and predict the productivity of hybrid pigs by phenotypic characteristics. The purpose of the study was to conduct zootechnical analysis to determine the presence of an association of mtDNA haplotypes with signs of fattening productivity in hybrid pigs (Large White × Landrace). The study was conducted on an experimental sample of pigs (n = 18), which are the result of direct (Large White × Landrace) and reciprocal crossing (Landrace × Large White). DNA extraction was performed from epithelial tissue using a kit DNA-sorb-B nucleic acid extraction kit from “InterLabService-Ukraine” LLC. A previous study identified 4 mtDNA haplotypes among hybrid pigs of Irish selection, three of which are grouped with pigs of European origin clade “E” – С (Landrace, Hampshire, Wales, wild pig); G (Wales, wild pig); O (Landrace, wild pig). Pigs with haplotype N (Large White, Berkshire, Asian wild pig) grouped with pigs of Asian origin. Asian-type pigs with mitochondrial haplotype N belong to the Asian cluster «clade A». The common origin of hybrid pigs has been determined and it has been clarified and how these mitochondrial haplotypes affect fattening productivity has been identified. The estimated main phenotypic indicators are the following average values for relation to mitochondrial haplotypes in pigs. (С, G, O, N): а) average daily weight gain for the fattening period, kg/g – haplotype C (867 g), N (835 g) 77%; for haplotype G (761 g) 74% and 75% (789 g) for haplotype O. b) the time spent in the fattening group, days, is 10% (107 days) for all haplotypes (C, G, O, N). c) Wet weight attainment, 100 kg/day, for haplotype C (144 days), N (141 days) 13 percent; 16% (165 days) for haplotype G and 15% (156 days) for haplotype O. Transfer to the rearing group was carried out at the same age of 63 days, but with a fairly large difference in weight of 5 and 9.2 kg, after all, the average value when fattening should be 30 kg. This also indicates an uneven growth of the studied sample of hybrid pigs. This is clearly reflected throughout the life of the studied pigs in the following indicators: the age of achievement of live weight is 100 kg/ day for the accounting period from birth before slaughter, for haplotype C – 144 and N – 141 days compared to pigs with haplotype O – 156 and G – 165 days with a difference of 13 and 22 days. The age of achievement of live weight is 100 kg/day for the accounting period from days of fattening before slaughter, for haplotype C – 150 and N – 145 days compared to pigs with haplotype O – 159 and G – 166 days with a difference of 11 and 18 days. Pigs with haplotypes C and N are characterized by a uniform average daily gain over the fattening period with an average of 851 g with a difference of -76 g with haplotypes O and G. It is worth noting that only all pigs with haplotypes C (0.696 g), G (0.605 g), O (0.642 g), N (0.715 g) – are characterized by a uniformly low average daily gain for the entire period of cultivation (from birth to removal from fattening). A logical assumption is that there are advantages of life priority for born pigs, who have an adequate birth weight to be profitable. These facts confirm the prospect of continuing research on the association of mtDNA haplotypes as determinantspig of productivity.

References

1. Anderson S., Bankier A. T., Barrell B. G., Bruijn M. H. L., Coulson A. R., Drouin J., Eperon I. C., Nierlich D. P., Roe B. A., Sanger F., Schreier P. H., Smith A. J. H., Staden R., Young I. G. (1981). Sequence and organization of the human mitochondrial genome [Nature volume]. 290, 457–465. DOI: https://doi.org/10.1038/290457a0
2. Björn M. Ursing, Ulfur Arnason. (1998). The Complete Mitochondrial DNA Sequence of the Pig (Sus scrofa) [Journal of Molecular Evolution]. 47, 302–306. DOI: https://doi.org/10.1007/PL00006388
3. Budakva Ye.O., Pochernyaev K. F., Korinnyi S. M., Povod M. G. (2022). The use of mitochondrial genome polymorphism to establish pro-maternal breeds in the final hybrids of pigs [Grail of Science]. (12–13), 198–204. DOI: https://doi.org/10.36074/grail-of-science.29.04.2022.030
4. Budakva Ye. O. (2022). Determination of the genetic structure of pro-maternal pig breeds of Irish selection using mitochondrial DNA markers [The Animal Biology]. 24(2), 3–8. DOI: https://doi.org/10.15407/animbiol24.02.003
5. Budakva Ye. O. (2022). Identification of a biological representative (Sus scrofa domestica) using mitochondrial DNA markers [The Animal Biology]. 24(2), 28. DOI: http://aminbiol.com.ua/images/Journal/2022/2/AB_2022_24_2.pdf
6. Eduardo Ruiz-Pesini, Dan Mishmar, Martin Brandon, Vincent Procaccio, Douglas C Wallace. (2004). Effects of purifying and adaptive selection on regional variation in human mtDNA [Science]. 303(5655), 223–226. DOI: https://doi.org/10.1126/science.1088434
7. Guanghui Yu, Hai Xiang, Jianhui Tian, Jingdong Yin, Carl A. Pinkert, Qiuyan Li, Xingbo Zhao. (2015). Mitochondrial Haplotypes Influence Metabolic Traits in Porcine Transmitochondrial Cybrids [Scientific Reports]. 5, 13118. DOI: https://doi.org/10.1038/srep13118
8. Ghiselli F, Milani L. (2019). Linking the mitochondrial genotype to phenotype: a complex endeavor [Phil. Trans. R. Soc B.]. 375, 20190169. DOI : http://dx.doi.org/10.1098/rstb.2019.0169
9. Häggman J., P. Uimari. (2016). Novel harmful recessive haplotypes for reproductive traits in pigs [Animal Breeding and Genetics]. 134(2), 129–135. DOI: https://doi.org/10.1111/jbg.12240
10. Hieu Duc Nguyen, Tuan Anh Bui, Phuong Thanh Nguyen, Oanh Thi Phuong Kim, Thuy Thi Bich Vo. (2017). The complete mitochondrial genome sequence of the indigenous I pig (Sus scrofa) in Vietnam [Asian-Australas J Anim Sci]. 30(7), 930–937. DOI: https://doi.org/10.5713%2Fajas.16.0608
11. Jeffrey H. Schwartz. (2021). Evolution, systematics, and the unnatural history of mitochondrial DNA [Mitochondrial DNA Part A]. 32(4), 126–151. DOI: https://doi.org/10.1080/24701394.2021.1899165
12. Justin C. St. John, Te-Sha Tsai. (2018). The association of mitochondrial DNA haplotypes and phenotypic traits in pigs [BMC Genet]. 19(41). DOI: https://doi.org/10.1186%2Fs12863-018-0629-4
13. Kanis E., De Greef K. H., Hiemstra A., Van Arendonk J. A. M. (2005). Breeding for societally important traits in pigs [Journal of Animal Science]. 83(4), 948–957. DOI: https://doi.org/10.2527/2005.834948x
14. Luiz F. Brito, Hinayah R. Oliveira, Betty R. McConn, Allan P. Schinckel1, Aitor Arrazola, Jeremy N. Marchant-Forde, Jay S. Johnson. (2020). Large-Scale Phenotyping of Livestock Welfare in Commercial Production Systems: A New Frontier in Animal Breeding [Front. Genet]. 11, 793. DOI: https://doi.org/10.3389/fgene.2020.00793
15. Madonna Benjamin, Steven Yik. (2019). Precision Livestock Farming in Swine Welfare: A Review for Swine Practitioners [Animals]. 9(4), 133. DOI: https://doi.org/10.3390/ani9040133
16. Mareike Pfeifer, Armin Otto Schmitt, Engel Friederike Hessel. (2020). Animal Welfare Assessment of Fattening Pigs: A Case Study on Sample Validity [Animals]. 10(3), 389. DOI: https://doi.org/10.3390/ani10030389
17. Milani L, Ghiselli F. (2019). Faraway, so close. The comparative method and the potential of non-model animals in mitochondrial research [Phil. Trans. R. Soc. B]. 375, 20190186. DOI: https://doi.org/10.1098/rstb.2019.0186
18. Pocherniaiev K. F., Berezovskyi M. D. (2014). Vykorystannia mitokhondrialnykh DNK-markeriv dlia kontroliu dostovirnosti pokhodzhennia henealohichnykh struktur svynomatok. [The use of mitochondrial DNA markers to control the authenticity of origin of genealogical structures of sows: a methodical recommendations]. Poltava : Firm Techservice LLC. (in Ukrainian).
19. Pochernyaev K. F. (2005). Sposib vyznachennia mitokhondrialnykh haplotypiv svynei. [Method of determination of mitochondrial haplotypes of pigs : a declaration patent of Ukraine no. A61D7/00 with priority from 16.05.2005]. Ukraine : Base of patents of Ukraine (in Ukrainian).
20. Sanjana Saravanan, Caitlin J. Lewis, Bhavna Dixit, Matthew S. O’Connor, Alexandra Stolzing, Amutha Boominathan (2022). The Mitochondrial Genome in Aging and Disease and the Future of Mitochondrial Therapeutics [Biomedicines]. 10(2), 490. DOI: https://doi.org/10.3390/biomedicines10020490
21. Te-Sha Tsai, Sriram Rajasekar, Justin C. St. John. (2016). The relationship between mitochondrial DNA haplotype and the reproductive capacity of domestic pigs (Sus scrofa domesticus) [BMC Genetics]. 17(67). DOI: https://doi.org/10.1186/s12863-016-0375-4
22. Thomas Pfeiffer, Stefan Schuster, Sebastian Bonhoeffer. (2001). Cooperation and Competition in the Evolution of ATP-Producing Pathways [Science]. 292(5516), 504–507. DOI: https://doi.org/10.1126/science.1058079
23. Yen N. T., Lin C. S., Ju C. C., Wang S. C., Huang M. C. (2007). Mitochondrial DNA Polymorphism and Determination of Effects on Reproductive Trait in Pigs [Reproduction in Domestic Animals]. 42(4), 387–392. DOI: https://doi.org/10.1111/j.1439-0531.2006.00797.x
Published
2022-09-29
How to Cite
Budakva, Y. O. (2022). ASSOCIATION OF MITOCHONDRIAL HAPLOTYPES WITH PHENOTYPIC SIGNS OF FATTENING PRODUCTIVITY IN HYBRID PIGS. Bulletin of Sumy National Agrarian University. The Series: Livestock, (2), 8-13. https://doi.org/10.32845/bsnau.lvst.2022.2.2